Difference between revisions of "Informatics"

Informatics (view source)

290 bytes added , 09:34, 18 October 2019

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 [https://computationalpathologygroup.github.io/ASAP/ ASAP] is an open-source whole-slide image viewer.
-==Whole-Slide Images==
+[https://www.ilastik.org/ Ilastik - interactive learning and segmentation toolkit] is an open source tool to perform segmentation and classification of images. Currently it does not support full virtual slides.<ref>{{Cite journal  | last1 = Berg | first1 = S. | last2 = Kutra | first2 = D. | last3 = Kroeger | first3 = T. | last4 = Straehle | first4 = CN. | last5 = Kausler | first5 = BX. | last6 = Haubold | first6 = C. | last7 = Schiegg | first7 = M. | last8 = Ales | first8 = J. | last9 = Beier | first9 = T. | title = ilastik: interactive machine learning for (bio)image analysis. | journal = Nat Methods | volume =  | issue =  | pages =  | month = Sep | year = 2019 | doi = 10.1038/s41592-019-0582-9 | PMID = 31570887 }}</ref>
-*Most common formats:
-    **Philips (.tiff)
-    **Aperio (.svs, .tif)
-    **Hamamatsu (.vms, .vmu, .ndpi)
-    **Leica (.scn)
-    **Sakura (.svslide)
-    **MIRAX (.mrxs)
-    **Ventana (.bif, .tif)
-    **Generic tiled TIFF (.tif)
-*There is a push for an open virtual slide format.
-*A free C library exists to read whole-slide images.<ref>URL: [http://openslide.org/ http://openslide.org/]. Accessed on: 3 May 2013.</ref>
 ==Health informatics directory==