Difference between revisions of "Informatics"

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[https://qupath.github.io/ QPath] is a open source software platform for whole slide image analysis.<ref>{{Cite journal  | last1 = Bankhead | first1 = P. | last2 = Loughrey | first2 = MB. | last3 = Fernández | first3 = JA. | last4 = Dombrowski | first4 = Y. | last5 = McArt | first5 = DG. | last6 = Dunne | first6 = PD. | last7 = McQuaid | first7 = S. | last8 = Gray | first8 = RT. | last9 = Murray | first9 = LJ. | title = QuPath: Open source software for digital pathology image analysis. | journal = Sci Rep | volume = 7 | issue = 1 | pages = 16878 | month = 12 | year = 2017 | doi = 10.1038/s41598-017-17204-5 | PMID = 29203879 }}</ref>
[https://qupath.github.io/ QPath] is a open source software platform for whole slide image analysis.<ref>{{Cite journal  | last1 = Bankhead | first1 = P. | last2 = Loughrey | first2 = MB. | last3 = Fernández | first3 = JA. | last4 = Dombrowski | first4 = Y. | last5 = McArt | first5 = DG. | last6 = Dunne | first6 = PD. | last7 = McQuaid | first7 = S. | last8 = Gray | first8 = RT. | last9 = Murray | first9 = LJ. | title = QuPath: Open source software for digital pathology image analysis. | journal = Sci Rep | volume = 7 | issue = 1 | pages = 16878 | month = 12 | year = 2017 | doi = 10.1038/s41598-017-17204-5 | PMID = 29203879 }}</ref>


==Virtual slides==
==Whole-Slide Images==
*Most common formats:
    **Philips (.tiff)
    **Aperio (.svs, .tif)
    **Hamamatsu (.vms, .vmu, .ndpi)
    **Leica (.scn)
    **Sakura (.svslide)
    **MIRAX (.mrxs)
    **Ventana (.bif, .tif)
    **Generic tiled TIFF (.tif)
*There is a push for an open virtual slide format.
*There is a push for an open virtual slide format.
*A free C library exists to read whole-slide images.<ref>URL: [http://openslide.org/ http://openslide.org/]. Accessed on: 3 May 2013.</ref>
*A free C library exists to read whole-slide images.<ref>URL: [http://openslide.org/ http://openslide.org/]. Accessed on: 3 May 2013.</ref>
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