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Jensflorian (talk | contribs) (→Open source: Qpath) |
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[https://qupath.github.io/ QPath] is a open source software platform for whole slide image analysis.<ref>{{Cite journal | last1 = Bankhead | first1 = P. | last2 = Loughrey | first2 = MB. | last3 = Fernández | first3 = JA. | last4 = Dombrowski | first4 = Y. | last5 = McArt | first5 = DG. | last6 = Dunne | first6 = PD. | last7 = McQuaid | first7 = S. | last8 = Gray | first8 = RT. | last9 = Murray | first9 = LJ. | title = QuPath: Open source software for digital pathology image analysis. | journal = Sci Rep | volume = 7 | issue = 1 | pages = 16878 | month = 12 | year = 2017 | doi = 10.1038/s41598-017-17204-5 | PMID = 29203879 }}</ref> | [https://qupath.github.io/ QPath] is a open source software platform for whole slide image analysis.<ref>{{Cite journal | last1 = Bankhead | first1 = P. | last2 = Loughrey | first2 = MB. | last3 = Fernández | first3 = JA. | last4 = Dombrowski | first4 = Y. | last5 = McArt | first5 = DG. | last6 = Dunne | first6 = PD. | last7 = McQuaid | first7 = S. | last8 = Gray | first8 = RT. | last9 = Murray | first9 = LJ. | title = QuPath: Open source software for digital pathology image analysis. | journal = Sci Rep | volume = 7 | issue = 1 | pages = 16878 | month = 12 | year = 2017 | doi = 10.1038/s41598-017-17204-5 | PMID = 29203879 }}</ref> | ||
== | ==Whole-Slide Images== | ||
*Most common formats: | |||
**Philips (.tiff) | |||
**Aperio (.svs, .tif) | |||
**Hamamatsu (.vms, .vmu, .ndpi) | |||
**Leica (.scn) | |||
**Sakura (.svslide) | |||
**MIRAX (.mrxs) | |||
**Ventana (.bif, .tif) | |||
**Generic tiled TIFF (.tif) | |||
*There is a push for an open virtual slide format. | *There is a push for an open virtual slide format. | ||
*A free C library exists to read whole-slide images.<ref>URL: [http://openslide.org/ http://openslide.org/]. Accessed on: 3 May 2013.</ref> | *A free C library exists to read whole-slide images.<ref>URL: [http://openslide.org/ http://openslide.org/]. Accessed on: 3 May 2013.</ref> | ||