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Difference between revisions of "DNA sequence comparison"
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→Nomenclature: FASTA + FASTQ
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==Nomenclature== | ==Nomenclature== | ||
This is still somewhat in flux.<ref name=pmid17251329>{{cite journal |author=Ogino S, Gulley ML, den Dunnen JT, Wilson RB |title=Standard mutation nomenclature in molecular diagnostics: practical and educational challenges |journal=J Mol Diagn |volume=9 |issue=1 |pages=1–6 |year=2007 |month=February |pmid=17251329 |pmc=1867422 |doi=10.2353/jmoldx.2007.060081 |url=http://moldiag.highwire.org/cgi/content/full/9/1/1#B6}}</ref> | This is still somewhat in flux.<ref name=pmid17251329>{{cite journal |author=Ogino S, Gulley ML, den Dunnen JT, Wilson RB |title=Standard mutation nomenclature in molecular diagnostics: practical and educational challenges |journal=J Mol Diagn |volume=9 |issue=1 |pages=1–6 |year=2007 |month=February |pmid=17251329 |pmc=1867422 |doi=10.2353/jmoldx.2007.060081 |url=http://moldiag.highwire.org/cgi/content/full/9/1/1#B6}}</ref> | ||
==Data format== | |||
'''FASTA''': This contains just DNA sequence. The first line starts with '>' and contains the record name. | |||
'''FASTQ''': This contains DNA sequence data with quality scores: The quality scores are indicated by defined characters. | |||
==Basic local alignment search tool== | ==Basic local alignment search tool== | ||